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- Article 1: Miscellaneous Rules
- Part 649: New York State Water Pollution Control Revolving Fund Regulations
- Part 650: Qualifications Of Operators Of Wastewater Treatment Plants
- Part 651: State Aid For Collection, Treatment and Disposal Of Sewage - Cost Of Operation and Maintenance Of Sewage Treatment Plants
- Part 653: Approval Of Realty Subdivisions
- Part 655: Industrial Waste Treatment Facilities; Certification For Tax Purposes
- Part 656: Sewage Effluent Standards For Marine Toilets In Watercraft Plying Waters Of The State
- Part 657: Standards Of Safety For Marine Toilets
- Part 658: Hearing Procedures-Water Pollution Control
- Part 659: Household Cleansing Products
- Part 660: Tidal Wetlands-Moratorium Permits
- Part 661: Tidal Wetlands-Land Use Regulations
- Part 662: Freshwater Wetlands-Interim Permits
- Part 663: Freshwater Wetlands Permit Requirements
- Part 664: Freshwater Wetlands Maps and Classification
- Part 665: Local Government Implementation Of The Freshwater Wetlands Act and Statewide Minimum Land-Use Regulations For Freshwater Wetlands
- Part 666: Regulation For Administration and Management Of The Wild, Scenic and Recreational Rivers System In New York State Excepting Private Land In The Adirondack Park
- Part 670: Reservoir Releases Regulations: Schoharie Reservoir Shandaken Tunnel-Esopus Creek
- Part 671: Reservoir Releases Regulations: Cannonsville, Pepacton and Neversink Reservoirs
- Part 672: Reservoir Releases Regulations: Other
- Subpart 672-1: Reservoir Releases Regulations - General
- Subpart 672-2: Ashokan, Kensico, Rondout and Schoharie Reservoirs
- Subpart 672-3: Croton System Reservoirs
- Subpart 672-4: Toronto, Swinging Bridge, Cliff Lake and Rio Reservoirs
- Subpart 672-5: East Sidney Lake, Sleepy Hollow Lake, Cooper Lake and Sturgeon Pool
- Subpart 672-6: References
- Part 673: Dam Safety Regulations
- Part 674: Hearings Of The Water Resources Planning Council
- Part 675: [Repealed]
- Article 2: Classes and Standards of Quality and Purity
- Part 700: Definitions, Samples and Tests
- Part 701: Classifications-Surface Waters and Groundwaters
- Part 702: Derivation and Use Of Standards and Guidance Values
- Part 703: Surface Water and Groundwater Quality Standards and Groundwater Effluent Limitations
- Part 704: Criteria Governing Thermal Discharges
- Part 705: References
- Part 706: Appendices For Parts 700 - 705
- Article 3 State Pollutant Discharge Elimination System
- Article 1: Allegheny River Drainage Basin Series
- Article 2 Black River Drainage Basin
- Article 3 Chemung River Drainage Basin Series
- Article 4 Delaware River Drainage Basin
- Article 5 Genesee River Drainage Basin Series
- Article 6 Housatonic River Drainage Basin
- Article 7 Lake Champlain Drainage Basin
- Article 8 Lake Erie--Niagara River Drainage Basin Series
- Article 9 Lake Ontario Drainage Basin Series
- Article 10 Lower Hudson River Drainage Basin Series
- Part 855 Rondout River, Rondout Creek and Wallkill River Drainage Basin
- Part 856 Sparkill Creek Drainage Basin
- Part 857 Wappinger Creek Drainage Basin
- Part 858 Lower Hudson River (Main Stream)
- Part 859 Saw Mill River Drainage Basin
- Part 860 Ramapo River and Mahwah River Drainage Basins
- Part 861 Lower Esopus Creek Drainage Basin
- Part 862 Drainage Basins of Streams Entering the Hudson River in Orange, Ulster, Dutchess and Putnam Counties
- Part 863 Drainage Basins of Streams Entering the Hudson River in Albany, Columbia, Greene and Rensselaer Counties
- Part 864 Lower Hudson River Drainage Basin from Mouth to Northern Westchester-rockland County Lines
- Part 865 Hackensack River-Saddle River and Greenwood Lake-Sterling Lake Drainage Basins
- Article 11 Mohawk River Drainage Basin Series
- Part 875 Sauquoit Creek Drainage Basin
- Part 876 Mohawk River Drainage Basin
- Part 877 Mohawk River (Between the Boundary Lines of the Towns of Floyd and Marcy and the Floyd Avenue Bridge in the City of Rome and the Barge Canal West of Tributary 227)
- Part 878 East Canada Creek Drainage Basin
- Part 879 Schoharie Creek Drainage Basin
- Part 880 West Canada Creek Drainage Basin
- Article 12 Nassau County Waters
- Article 13 New York City Waters Series
- Article 14 Oswego River Drainage Basin Series
- Article 15 St. Lawrence River Drainage Basin
- Article 16 Suffolk County Waters Series
- Article 17 Susquehanna River Drainage Basin Series
- Article 18 Upper East River and Long Island Sound Within Queens, Bronx and Westchester Counties
- Article 19 Upper Hudson River Drainage Basin Series